Publications

2011

• E.A. Kraneveld, J.J. de Soet, D.M. Deng, H.L. Dekker, C.G. de Koster, F.M. Klis, W. Crielaard & P.W.J. de Groot (2011). Identification and differential gene expression of adhesin-like wall proteins in Candida glabrata biofilms. Mycopathologia, 172(6), 415-427.
• A.G. Sorgo, C.J. Heilmann, H.L. Dekker, M. Bekker, S. Brul, C.G. de Koster, L.J. de Koning & F.M. Klis (2011). Effects of fluconazole on the secretome, the wall proteome, and wall integrity of the clinical fungus Candida albicans. EUKARYOT CELL, 10(8), 1071-1081.
• C.J. Heilmann, A.G. Sorgo, A.R. Siliakus, H.L. Dekker, S. Brul, C.G. de Koster, L.J. de Koning & F.M. Klis (2011). Hyphal induction in the human fungal pathogen Candida albicans reveals a characteristic wall protein profile. Microbiology, 157(8), 2297-2307.
• G.J. Sosinska, L.J. de Koning, P.W.J. de Groot, E.M.M. Manders, H.L. Dekker, K.J. Hellingwerf, C.G. de Koster & F.M. Klis (2011). Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH. Microbiology, 157(1), 136-146.
• C. Buerth, C.J. Heilmann, F.M. Klis, C.G. de Koster, J.F. Ernst & D. Tielker (2011). Growth-dependent secretome of Candida utilis. SGM Microbiology, 157(9), 2493-2503.
• F.M. Klis, C.G. de Koster & S. Brul (2011). A mass spectrometric view of the fungal wall proteome. Future Microbiology, 6(8), 941-951.
• E. A. Kraneveld, J. J. de Soet, D.M. Deng, H.L. Dekker, C.G. de Koster, F.M. Klis, W. Crielaard & P.W.J. de Groot (2011). Identification and differential gene expression of adhesin-like wall proteins in Candida glabrata biofilms. Mycopathologia, 172(6), 415-427.

2010

• F.M. Klis, S. Brul & P.W.J. de Groot (2010). Covalently linked wall proteins in ascomycetous fungi. Yeast, 27(8), 489-493.
• A. Zakrzewska, A. Boorsma, A. ter Beek, J.A. Hageman, J.A. Westerhuis, K.J. Hellingwerf, S. Brul, F.M. Klis & G.J. Smits (2010). Comparative analysis of transcriptome and fitness profiles reveals general and condition-specific cellular functions involved in adaptation to environmental change in Saccharomyces cerevisiae. Omics, 14(5), 603-614.
• K. Backhaus, C.J. Heilmann, A.G. Sorgo, G. Purschke, C.G. de Koster, F.M. Klis & J.J. Heinisch (2010). A systematic study of the cell wall composition of Kluyveromyces lactis. Yeast, 27(8), 647-660.
• A.G. Sorgo, C.J. Heilmann, H.L. Dekker, S. Brul, C.G. de Koster & F.M. Klis (2010). Mass spectrometric analysis of the secretome of Candida albicans. Yeast, 27(8), 661-672.
• A.D. de Boer, P.W.J. de Groot, G. Weindl, M. Schaller, D. Riedel, R. Diez-Orejas, F.M. Klis, C.G. de Koster, H.L. Dekker, U. Gross, O. Bader & M. Weig (2010). The Candida albicans cell wall protein Rhd3/Pga29 is abundant in the yeast form and contributes to virulence. Yeast, 27(8), 611-624.

2009

• J.R. Wortman, J.M. Gilsenan, V. Joardar, J. Deegan, J. Clutterbuck, M.R. Andersen, D. Archer, M. Bencina, G. Braus, P. Coutinho, H. von Döhren, J. Doonan, A.J.M. Driessen, P. Durek, E. Espeso, E. Fekete, M. Flipphi, C.G. Estrada, S. Geysens, G. Goldman, P.W.J. de Groot, K. Hansen, S.D. Harris, T. Heinekamp, K. Helmstaedt, B. Henrissat, G. Hofmann, T. Homan, T. Horio, H. Horiuchi, S. James, M. Jones, L. Karaffa, Z. Karányi, M. Kato, N. Keller, D.E. Kelly, J.A.K.W. Kiel, J.M. Kim, I.J. van der Klei, F.M. Klis, A. Kovalchuk, N. Kraševec, C.P. Kubicek, B. Liu, A. MacCabe, V. Meyer, P. Mirabito, M. Miskei, M. Mos, J. Mullins, D.R. Nelson, J. Nielsen, B.R. Oakley, S.A. Osmani, T. Pakula, A. Paszewski, I. Paulsen, S. Pilsyk, I. Pócsi, P.J. Punt, A.F.J. Ram, Q. Ren, X. Robellet, G. Robson, B. Seiboth, P. van Solingen, T. Specht, J. Sun, N. Taheri-Talesh, N. Takeshita, D. Ussery, P.A. vanKuyk, H. Visser, P.J.I. van de Vondervoort, R.P. de Vries, J. Walton, X. Xiang, Y. Xiong, A.P. Zeng, B.W. Brandt, M.J. Cornell, C.A.M.J.J. van den Hondel, J. Visser, S.G. Oliver & G. Turner (2009). The 2008 update of the Aspergillus nidulans genome annotation: A community effort. Fungal Genetics and Biology, 46(1), S2-S13.
• J.M. ten Cate, F.M. Klis, T. Pereira-Cenci, W. Crielaard & P.W.J. de Groot (2009). Molecular and cellular mechanisms that lead to Candida biofilm formation. Journal of Dental Research, 88(2), 105-115.
• E. Moreno-Ruiz, G. Ortu, P.W.J. de Groot, F. Cottier, C. Loussert, M.C. Prévost, C. de Koster, F.M. Klis, S. Goyard & C. d'Enfert (2009). The GPI-modified proteins Pga59 and Pga62 of Candida albicans are required for cell wall integrity. Microbiology, 155(6), 2004-2020.
• G. Butler, M.D. Rasmussen, M.F. Lin, M.A.S. Santos, S. Sakthikumar, C.A. Munro, E. Rheinbay, M. Grabherr, A. Forche, J.L. Reedy, I. Agrafioti, M.B. Arnaud, S. Bates, A.J.P. Brown, S. Brunke, M.C. Costanzo, D.A. Fitzpatrick, P.W.J. de Groot, D. Harris, L.L. Hoyer, B. Hube, F.M. Klis, C. Kodira, N. Lennard, M.E. Logue, R. Martin, A.M. Neiman, E. Nikolaou, M.A. Quail, J. Quinn, M.C. Santos, F.F. Schmitzberger, G. Sherlock, P. Shah, K.A.T. Silverstein, M.S. Skrzypek, D. Soll, R. Staggs, I. Stansfield, M.P.H. Stumpf, P.E. Sudbery, T. Srikantha, Q. Zeng, J. Berman, M. Berriman, J. Heitman, N.A.R. Gow, M.C. Lorenz, B.W. Birren, M. Kellis & C.A. Cuomo (2009). Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature, 459(7247), 657-662.
• P.W.J. de Groot, B.W. Brandt, H. Horiuchi, A.F.J. Ram, C.G. de Koster & F.M. Klis (2009). Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans. Fungal Genetics and Biology, 46(1), S72-S81.
• F.M. Klis, G.J. Sosinska, P.W.J. de Groot & S. Brul (2009). Covalently linked cell wall proteins of Candida albicans and their role in fitness and virulence. FEMS Yeast Research, 9(7), 1013-1028.
• M. Gonzalez, P.W.J. de Groot, F.M. Klis & P.N. Lipke (2009). Glycoconjugate structure and function in fungal cell walls. In A.P. Moran, O. Holst, P.J. Brennan & M. von Itzstein (Eds.), Microbial glycobiology: structures, relevance and applications (pp. 169-183). Amsterdam: Academic Press.

2008

• R.A. Damveld, A. Franken, M. Arentshorst, P.J. Punt, F.M. Klis, C.A.M.J.J. van den Hondel & A.F.J. Ram (2008). A novel screening method for cell wall mutants in Aspergillus niger identifies UDP-galactopyranose mutase as an important protein in fungal cell wall biosynthesis. Genetics, 178(2), 873-881.
• P.W.J. de Groot & F.M. Klis (2008). The conserved PA14 domain of cell wall-associated fungal adhesins governs their glycan-binding specificity. Molecular Microbiology, 68(3), 535-537.
• A. Boorsma, X.-J. Lu, A. Zakrzewska, F.M. Klis & H.J. Bussemaker (2008). Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression. PLoS One, 3(9), e3112.
• G.J. Sosinska, P.W.J. de Groot, M.J. Teixeira De Mattos, H.L. Dekker, C.G. de Koster, K.J. Hellingwerf & F.M. Klis (2008). Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions. Microbiology, 154(2), 510-520.
• Q.Y. Yin, P.W.J. de Groot, C.G. de Koster & F.M. Klis (2008). Mass spectrometry-based proteomics of fungal wall glycoproteins. Trends in Microbiology, 16(1), 20-26.
• P.W.J. de Groot, E.A. Kraneveld, Q.Y. Yin, H.L. Dekker, U. Groß, W. Crielaard, C.G. de Koster, O. Bader, F.M. Klis & M. Weig (2008). The cell wall of the human pathogen Candida glabrata: differential incorporation of novel adhesin-like wall proteins. Eukaryotic Cell, 7(11), 1951-1964.

2011

• P.W.J. de Groot, S. Brul & F.M. Klis (2011). Exploring the fungal wall glycoproteome. Essential Reviews in Experimental Biology. In SA Brooks, PM Rudd & BJ Appelmelk (Eds.), Glycosylation in Diverse Cell Systems: Challenges and New Frontiers in Experimental Glycobiology (pp. 6). London, UK: The Society for Experimental Biology.
• I. Klei, M. Veenhuis, S. Brul, F.M. Klis, P.W.J. de Groot, W.H. Muller, K.G.A. van Driel & T. Boekhout (2011). Cytology, Cell Walls and septa: A Summary of Yeast Cell Biology from a Phylogenetic Perspective. In C..P. Kurtzman, J..W. Fell & T. Boekhout (Eds.), The Yeasts, a Taxonomic Study, Volume 1 (pp. 111-8). London (UK), Burlington, MA (USA), San Diego, CA (USA): Elsevier.