Publications

2012

• G. Gonorazky, A.M. Laxalt, H.L. Dekker, M. Rep, T. Munnik, C. Testerink & L. de la Canal (2012). Phosphatidylinositol 4-phosphate is associated to extracellular lipoproteic fractions and is detected in tomato apoplastic fluid. Plant Biology, 14, 41-49.

2011

• W. Jonkers, J.A.L. van Kan, P. Tijm, Y.-W. Lee, P. Tudzynski, M. Rep & C.B. Michielse (2011). The FRP1 F-box gene has different functions in sexuality, pathogenicity and metabolism in three fungal pathogens. Molecular Plant Pathology, 12(6), 548-563.
• V. Krasikov, H.L. Dekker, M. Rep & F.L.W. Takken (2011). The tomato xylem sap protein XSP10 is required for full susceptibility to Fusarium wilt disease. Journal of Experimental Botany, 62(3), 963-973.
• A. Chakrabarti, M. Rep, B. Wang, A. Ashton, P. Dodds & E. Ellis (2011). Variation in potential effector genes distinguishing Australian and non-Australian isolates of the cotton wilt pathogen Fusarium oxysporum f.sp. vasinfectum. Plant Pathology, 60(2), 232-243.

2010

• F. Takken, G. van Ooijen, E. Lukasik, L. Ma, F. Gawehns, P. Houterman & M. Rep (2010). How to resist a tomato resistance gene? In H. Antoun, T. Avis, L. Brisson, D. Prévost & M. Trepanier (Eds.), Proceedings of the 14th International Congress on Molecular Plant-Microbe Interactions Vol. 7. Biology of plant-microbe interactions. St. Paul, MN: International Society for Molecular Plant-Microbe Interactions (IS-MPMI).
• L.J. Ma, H.C. van der Does, K.A. Borkovich, J.J. Coleman, M.J. Daboussi, A. Di Pietro, M. Dufresne, M. Freitag, M. Grabherr, B. Henrissat, P.M. Houterman, S. Kang, W.B. Shim, C. Woloshuk, X. Xie, J.-R Xu, J. Antoniw, S.E. Baker, B.H. Bluhm, A. Breakspear, D.W. Brown, R.A.E. Butchko, S. Chapman, R. Coulson, P.M. Coutinho, E.G.J. Danchin, A. Diener, L.R. Gale, D.M. Gardiner, S. Goff, K.E. Hammond-Kosack, K. Hilburn, A. Hua-Van, W. Jonkers, K. Kazan, C.D. Kodira, M. Koehrsen, L. Kumar, Y.H. Lee, L. Li, J.M. Manners, D. Miranda-Saavedra, M. Mukherjee, G. Park, J. Park, S.Y. Park, R.H. Proctor, A. Regev, M.C. Ruiz-Roldan, D. Sain, S. Sakthikumar, S. Sykes, D.C. Schwartz, B. Gillian Turgeon, I. Wapinski, O. Yoder, S. Young, Q. Zeng, S. Zhou, J. Galagan, C.A. Cuomo, H.C. Kistler & M. Rep (2010). Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature, 464(7287), 367-373.
• M. Rep & H.C. Kistler (2010). The genomic organization of plant pathogenicity in Fusarium species. Current Opinion in Plant Biology, 13(4), 420-426.
• K. Ament, V. Krasikov, S. Allmann, M. Rep, F.L.W. Takken & R.C. Schuurink (2010). Methyl salicylate production in tomato affects biotic interactions. Plant Journal, 62(1), 124-134.
• F. Takken & M. Rep (2010). The arms race between tomato and Fusarium oxysporum. Molecular Plant Pathology, 11(2), 309-314.

2009

• P.M. Houterman, L. Ma, G. van Ooijen, M.J. de Vroomen, B.J.C. Cornelissen, F.L.W. Takken & M. Rep (2009). The effector protein Avr2 of the xylem-colonizing fungus Fusarium oxysporum activates the tomato resistance protein I-2 intracellularly. Plant Journal, 58(6), 970-978.
• W. Jonkers & M. Rep (2009). Mutation of CRE1 in Fusarium oxysporum reverts the pathogenicity defects of the FRP1 deletion mutant. Molecular Microbiology, 74(5), 1100-1113.
• C.B. Michielse, R. van Wijk, L. Reijnen, E.M.M. Manders, S. Boas, C. Olivain, C. Alabouvette & M. Rep (2009). The nuclear protein Sge1 of Fusarium oxysporum is required for parasitic growth. PLOS Pathogens, 5(10), e1000637.
• B. Lievens, P.M. Houterman & M. Rep (2009). Effector gene screening allows unambiguous identification of Fusarium oxysporum f. sp. lycopersici races and discrimination from other formae speciales. FEMS Microbiology Letters, 300(2), 201-215.
• J.J. Coleman, S.D. Rounsley, M. Rodriguez-Carres, A. Kuo, C.C. Wasmann, J. Grimwood, J. Schmutz, M. Taga, G.J. White, S. Zhou, D.C. Schwartz, M. Freitag, L-j. Ma, E.G.J. Danchin, B. Henrissat, P.M. Coutinho, D.R. Nelson, D. Straney, C.A. Napoli, B.M. Barker, M. Gribskov, M. Rep, S. Kroken, I. Molnár, C. Rensing, J.C. Kennell, J. Zamora, M.L. Farman, E.U. Selker, A. Salamov, H. Shapiro, J. Pangilinan, E. Lindquist, C. Lamers, I.V. Grigoriev, D.M. Geiser, S.F. Covert, E. Temporini & H.D. VanEtten (2009). The genome of Nectria haematococca: Contribution of supernumerary chromosomes to gene expansion. PLOS Genetics, 5(8), e1000618.
• B. Lievens, P. van Baarlen, C. Verreth, S. Van Kerckhove, M. Rep & B.P.H.J. Thomma (2009). Evolutionary relationships between Fusarium oxysporum f. sp. lycopersici and F. oxysporum f. sp. radicis-lycopersici isolates inferred from mating type, elongation factor-1α and exopolygalacturonase sequences. Mycological Research, 113(10), 1181-1191.
• W. Jonkers, C.D. Andrade Rodrigues & M. Rep (2009). Impaired colonization and infection of tomato roots by the Δfrp1 mutant of Fusarium oxysporum correlates with reduced CWDE gene expression. Molecular Plant-Microbe Interactions, 22(5), 507-518.
• W. Jonkers & M. Rep (2009). Lessons from fungal F-box proteins. Eukaryotic Cell, 8(5), 677-695.
• C.B. Michielse, R. van Wijk, L. Reijnen, B.J.C. Cornelissen & M. Rep (2009). Insight into the molecular requirements for pathogenicity of Fusarium oxysporum f. sp. lycopersici through large-scale insertional mutagenesis. Genome Biology, 10(1), R4.
• C.B. Michielse & M. Rep (2009). Pathogen profile update: Fusarium oxysporum. Molecular Plant Pathology, 10(3), 311-324.

2008

• H.C. van der Does, B. Lievens, L. Claes, P.M. Houterman, B.J.C. Cornelissen & M. Rep (2008). The presence of a virulence locus discriminates Fusarium oxysporum isolates causing tomato wilt from other isolates. Environmental Microbiology, 10(6), 1475-1485.
• P.M. Houterman, B.J.C. Cornelissen & M. Rep (2008). Suppression of plant resistance gene-based immunity by a fungal effector. PLOS Pathogens, 4(5), e1000061.
• H.C. van der Does, R.G.E. Duyvesteijn, P.M. Goltstein, C.C.N. van Schie, E.M.M. Manders, B.J.C. Cornelissen & M. Rep (2008). Expression of effector gene SIX1 of Fusarium oxysporum requires living plant cells. Fungal Genetics and Biology, 45(9), 1257-1264.
• B. Lievens, M. Rep & B.P.H.J. Thomma (2008). Recent developments in the molecular discrimination of formae speciales of Fusarium oxysporum. Pest Manag Sci, 64(8), 781-788.

2007

• C.A. Cuomo, U. Güldener, J.-R Xu, F. Trail, B.G. Turgeon, A. Di Pietro, J.D. Walton, L.J. Ma, S.E. Baker, M. Rep, G. Adam, J. Antoniw, T. Baldwin, S. Calvo, Y.- Chang, D. DeCaprio, L.R. Gale, S. Gnerre, R.S. Goswami, K. Hammond-Kosack, L.J. Harris, K. Hilburn, J.C. Kennell, S. Kroken, J.K. Magnuson, G. Mannhaupt, E. Mauceli, H.- Mewes, R. Mitterbauer, G. Muehlbauer, M. Münsterkötter, D. Nelson, K. O'Donnell, T. Quellet, W. Qi, H. Quesneville, M.I.G. Roncero, K.- Seong, I.V. Tetko, M. Urban, C. Waalwijk, T.J. Ward, J. Yao, B.W. Birren & H.C. Kistler (2007). The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science, 317(5843), 1400-1402.
• P.M. Houterman, D. Speijer, H.L. Dekker, C.G. de Koster, B.J.C. Cornelissen & M. Rep (2007). The mixed xylem sap proteome of Fusarium oxysporum-infected tomato plants. Molecular Plant Pathology, 8(2), 215-221.
• H.C. van der Does & M. Rep (2007). Virulence genes and the evolution of plant pathogenicity in fungi. Molecular Plant-Microbe Interactions, 20, 1175-1182.
• P.M. Houterman, D. Speijer, H.L. Dekker, C.G. de Koster, B.J.C. Cornelissen & M. Rep (2007). The mixed proteome of Fusarium oxysporum-infected tomato xylem vessels. Molecular Plant Pathology, 8, 215-221.

2006

• L.C. van Loon, M. Rep & C. Pieterse (2006). Significance of inducible defense-related proteins in infected plants. Annual Review of Phytopathology, 44, 7.1-7.28.
• M. Rep, R.G.E. Duyvesteijn, L. Gale, T. Usgaard, B.J.C. Cornelissen, L.J. Ma & T.J. Ward (2006). The presence of GC-AG introns in N. crassa and other euascomycetes determined from analyses of complete genomes: implications for automated gene prediction. GENOMICS, 87, 338-347.
• J. Kehr & M. Rep (2006). Protein extraction from xylem and phloem sap Plant Proteomics: Methods and Protocols. In V. Mechin, C. Damerval, M. Zivy & H. Thiellement (Eds.), Methods in Molecular Biology (355) (pp. 27-36). Humana press.
• M. Rep, H.C. van der Does, M. Meijer, P.M. Houterman, H.L. Dekker, D. Speijer, C.G. de Koster & B.J.C. Cornelissen (2006). Secrets of xylem colonization- The xylem sap proteome of tomato infected with Fusarium oxysporum IS-MPM1. In C.. Quinto, S. Lopes-Lara Sanchez & O. Geiger (Eds.), Biology of Plant-Microbe Interactions (pp. 597-601).

2005

• M. Rep, M. Meijer, P.M. Houterman, H.C. van der Does & B.J.C. Cornelissen (2005). Fusarium oxysporum evades the 1-3-meidated resistance without altering the matching avirulence gene. Molecular Plant-Microbe Interactions, 18(1), 15-23.
• K.M. Leon-Kloosterziel, B.W.M. Verhagen, J.J.B. Keurentjes, M. Rep, L.C. van Loon & C.M.J. Pieterse (2005). Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Plant Molecular Biology, 57, 731-748.
• R.G.E. Duyvesteijn, R. van Wijk, Y. Boer, M. Rep, B.J.C. Cornelissen & M.A. Haring (2005). Frp1 is a Fusarium oxysporum F-box protein required for pathogenicity on tomato. Molecular Microbiology, 57(4), 1051-1063.
• M. Rep (2005). Small proteins of plant-pathogenic fungi secreted during host colonization. FEMS Microbiology Letters, 253, 19-27.
• M. Rep, H.C. van der Does & B.J.C. Cornelissen (2005). Drifter, a novel, low copy hAT-like transposon in Fusarium oxysporum is activated during starvation. Fungal Genetics and Biology, 42, 546-553.

2004

• M. Rep, H.C. van der Does, M. Meijer, R. van Wijk, P.M. Houterman, H.L. Dekker, C.G. de Koster & B.J.C. Cornelissen (2004). A small, cysteine-rich protein secreted by Fusarium oxysporum during colonization of xylem vessels is required for 1-3-mediated resistance in tomato. Molecular Microbiology, 53, 1373-1383.

2003

• M. Rep, H.L. Dekker, J.H. Vossen, A.D. de Boer, P.M. Houterman, C.G. de Koster & B.J.C. Cornelissen (2003). A tomato xylem sap protein represents a new family of small cysteine-rich proteins with structural similarity to lipid transfer proteins. FEBS Letters, 534, 82-86.
• H.A.S. Teunissen, M. Rep, P.M. Houterman, B.J.C. Cornelissen & M.A. Haring (2003). Construction of a mitotic linkage map of Fusarium oxysporum based on Foxy-AFLPs. Mol. Genet. Genomics, 269, 215-226.

2002

• MG Koerkamp, M. Rep, H.J. Bussemaker, G.P.M.A. Hardy, A Mul, K. Piekarska, C.A. Szigyarto, M.J. Teixeira De Mattos & H.F. Tabak (2002). Dissection of Transient Oxidative Stress Response in Saccharomyces cerevisiae by Using DNA Microarrays. Molecular Biology of the Cell, 13, 2783-2794.
• M. Rep, H.L. Dekker, J.H. Vossen, A. de Boer, P.M. Houterman, D. Speijer, J.W. Back, C.G. de Koster & B.J.C. Cornelissen (2002). Mass spectrometric identification of isoforms of PR proteins in xylem sap of fungus-infected tomato. Plant Physiology, 130, 904-917.
• M. Rep, H.L. Dekker, J.H. Vossen, A.D. de Boer, P.M. Houterman, D. Speijer, J.W. Back, C.G. de Koster & B.J.C. Cornelissen (2002). Mass spectrometric identification of Isoforms of PR proteins in xylem sap of fungus-infected tomato. Plant Physiology, 130(oct.), 904-917.

2001

• M. Rep, M. Proft, F. Remize, M. Tamás, R. Serrano, J.M. Thevelein & S. Hohmann (2001). The Saccharomyces cerevisiae Sko1p transcription factor mediates HOG pathway-dependent osmotic regulation of a set of genes encoding enzymes implicated in protection from oxidative damage. Molecular Microbiology, 40, 1067-1083.

2000

• M.J. Tamas, M. Rep, J.M. Thevelein & S. Hohmann (2000). Stimulation of the yeast high osmolarity glycerol (HOG) pathway: evidence for a signal generated by a change in turgor rather than by water stress. FEBS Letters, 472, 159-165.
• M. Rep, M. Krantz, J.M. Thevelein & S. Hohmann (2000). The transcriptional response of Saccharomyces cerevisiae to osmotic shock. Hot1p and Msn2p/Msn4p are required for the induction of subsets of high osmolarity glycerol pathway-dependent genes. The Journal of Biological Chemistry, 275, 8290-8300.

1997

• C.K. Suzuki, M. Rep, J.M. van Dijl, K. Suda, L.A. Grivell & G. Schatz (1997). ATP-dependent proteases that also chaperone protein biogenesis. TRENDS BIOCHEM SCI, 22, 118-123.

1996

• M. Rep, J. Nooy, E.J-M. Guelin & L.A. Grivell (1996). Three genes for mitochondrial proteins suppress null-mutations in both Afg3 and Rca1 when over-expressed. Current Genetics, 30, 206-211.
• M. Rep & L.A. Grivell (1996). MBA1 encodes a mitochondrial membrane-associated protein required for biogenesis of the respiratory chain. FEBS Letters, 388, 185-188.
• M. Rep & L.A. Grivell (1996). The role of protein degradation in mitochondrial function and biogenesis. Current Genetics, 30, 267-380.
• E.J-M. Guelin, M. Rep & L.A. Grivell (1996). Afg3p, a mitochondrial atp-dependent metalloprotease, is involved in degradation of mitochondrially-encoded cox1, cox3, cob, su6, su8 and su9 subunits of the inner membrane complex-III, complex-IV and complex-V. FEBS Letters, 381, 42-46.
• M. Rep, J.M. van Dijl, K. Suda, G. Schatz, L.A. Grivell & C.K. Suzuki (1996). Promotion of mitochondrial membrane complex assembly by a proteiolytically inactive yeast lon. Science, 274, 103-106.

2012

• H.C. van der Does & M. Rep (2012). Horizontal transfer of supernumerary chromosomes in fungi. METHODS MOL BIOL, 835, 427-437.

1995

• L.A. Grivell, S.D.J. Elzinga, E.J-M. Guelin, K. van Oosterum, M. Rep & J.C. van der Spek (1995). Nucleo-mitochondrial crosstalk in mitochondrial biogenesis. In Proc. 17th Int. Conf. Yeast Genetics and Molecular Biology (pp. S20-S20). Lissabon, Portugal.
• E.J-M. Guelin, M. Rep & L.A. Grivell (1995). Functional analysis of the yeast Afg3p, an ATP-dependent metalloprotease. In Proc. 1st Conf on the AAA family of ATPases (pp. 30-30). Gif-sur-Yvette, Frankrijk.
• E.J-M. Guelin, M. Rep & L.A. Grivell (1995). Role of the yeast Afg3p, an ATP-dependent metalloprotease, in mitochondrial biogenesis. In Proc. 1st Conf. on the AAA Family of ATPases (pp. 23-23). Gif-sur-Yvette, Frankrijk.

1994

• E.J-M. Guelin, M. Rep & L.A. Grivell (1994). Sequence of the AFG3 gene encoding a new member of the FtsH/Yme1/Tma subfamily of the AAA-protein family. Yeast, 10, 1389-1394.
• M. Rep, E.J-M. Guelin & L.A. Grivell (1994). A new member of the AAA protein family, AFG3, is involved in the synthesis or assembly of mitochondrially encoded subunits of respiratory enzyme complexes. In Int. Meeting on Yeast Genetics and Mol. Biology (pp. 74-74). Seattle, USA.
• L.A. Grivell, S.D.J. Elzinga, K. van Oosterum, E.J-M. Guelin, M. Rep & J.C. van der Spek (1994). Novel features of mitochondrial gene expression in yeast. In 4th Spanish-Portuguese Congress of Biochemistry (pp. 59-59). Salamanca.

1996

• M. Rep (1996, October 25). The Role of ATP-dependentProteases in Mitochondrial Biogenesis. UvA (164 pag.) (Enschede: Febodruk). Supervisor(s): prof.dr L.A. Grivell.

2011

• M. Rep (03-25-2011). Genen lenen. Intermediair